Population Genetic Analysis
===========================

Software
--------

.. list-table:: Analysis Method and Software
    :widths: 25 75
    :header-rows: 1
    
    * - Analysis Method
      - Software
    * - Genetic distance
      - custom python script
    * - Neighbor-joining tree
      - Ape
    * - PCoA
      - custom python script
    * - Infection complexity (Fws)
      - Moimix
    * - Infection relatedness (IBD)
      - hmmIBD
    * - Selection signals (xp-EHH, xp-nSL)
      - selscan