Population Genetic Analysis
Software
Analysis Method |
Software |
|---|---|
Genetic distance |
custom python script |
Neighbor-joining tree |
Ape |
PCoA |
custom python script |
Infection complexity (Fws) |
Moimix |
Infection relatedness (IBD) |
hmmIBD |
Selection signals (xp-EHH, xp-nSL) |
selscan |